Immunarch downsample
WitrynaPackage ‘immunarch’ December 15, 2024 Type Package Title Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires Version 0.9.0 Contact [email protected] WitrynaA comprehensive framework for bioinformatics exploratory analysis of bulk and single-cell T-cell receptor and antibody repertoires. It provides seamless data loading, analysis and visualisation for AIRR (Adaptive Immune Receptor Repertoire) data, both bulk immunosequencing (RepSeq) and single-cell sequencing (scRNAseq). Immunarch …
Immunarch downsample
Did you know?
Witryna1 lis 2024 · Introduction. immunarch is an R package designed to analyse T-cell receptor (TCR) and B-cell receptor (BCR) repertoires, mainly tailored to medical scientists and … Witryna1 lis 2024 · immunarch is an R package designed to analyse T-cell receptor (TCR) and B-cell receptor (BCR) repertoires, mainly tailored to medical scientists and …
WitrynaEvery object must have columns in the immunarch compatible format. immunarch_data_format. Competent users may provide advanced data … http://www.maths.bristol.ac.uk/R/web/packages/immunarch/immunarch.pdf
Witryna🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires - immunarch/sampling.R at master · … WitrynaA tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior.
WitrynaDefault value is "downsample" that downsamples the repertoires to the number of clones (i.e., reads / UMIs) that the smallest repertoire has, if user doesn't set any …
WitrynaSample10. ```. Basic analysis functions are: - `repExplore` - computes basic statistics, such as number of clones or distributions of lengths and counts. To explore them you need to pass the statistics, e.g. `count`, to the `.method`. - `repClonality` - computes the clonality of repertoires. how to simplify 3/8WitrynaIntroduction. immunarch is an R package designed to analyse T-cell receptor (TCR) and B-cell receptor (BCR) repertoires, mainly tailored to medical scientists and bioinformaticians. The mission of immunarch is to make immune sequencing data analysis as effortless as possible and help you focus on research instead of coding. how to simplify 64/100WitrynaImmunarch implements most of the widely used AIRR analysis methods, such as: clonality analysis, estimation of repertoire similarities in distribution of clonotypes and … how to simplify 6/15Witryna28 gru 2024 · Details. If .method is "downsample" then repSample chooses .n clones (not clonotypes!) from the input repertoires without any probabilistic simulation, but … how to simplify 64 1/3Witryna16 gru 2024 · immunarch is an R package designed to analyse T-cell receptor (TCR) and B-cell receptor (BCR) repertoires, mainly tailored to medical scientists and bioinformaticians. The mission of immunarch is to make immune sequencing data analysis as effortless as possible and help you focus on research instead of coding. … how to simplify 8/8Witryna🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires - immunarch/v2_data.Rmd at master · immunomind/immunarch ... " downsample ", 100) sapply(ds, nrow) ``` ```{r} ds = repSample(immdata $ data, " sample ", .n = 10) sapply(ds, nrow) ``` # Immunarch … how to simplify 5 over 10Witrynaimmunarch/R/io.R. #' your files, so all you need is simply provide the path to your files. #' See "Details" for more information on supported formats. See "Examples" for. #' … how to simplify 45/100